## Publications

**Journals:**

- L. Ein-Dor, Y. Goldschmidt, O. Lavi, G.E. Miller, M. Ninio, D. Dillenberger (2013) "Analytics for resiliency in the mainframe" IBM Journal of Research and Development , vol.57, no.5, pp.8:1,8:5, Sept.-Oct. 2013
- E Kermany, H. Michaelis, H Mazzawi, D Baras, Y Naveh (2013) "Analysis of advanced meter infrastructure data of water consumption in apartment buildings" KDD '13 Pages 1159-1167
- G. S. Padney, C. Yanover, T. E. Howard, Z. E. Sauna (2013) "Polymorphisms in the F8 Gene and MHC-II Variants as Risk Factors for the Development of Inhibitory Anti-Factor VIII Antibodies during the Treatment of Hemophilia A: A Computational Assessment" PLoS Computational Biology 9(5): e1003066
- R. Rinott, A. Jaimovich, and N. Friedman (2011). "Exploring transcription regulation through cell-to-cell variability". PNAS 108,pp. 6329-6334
- T. Johnson, T. Gaunt, S. Newhouse, S. Padmanabhan, M. Tomaszewski, M. Kumari, R. Morris, I. Tzoulaki, E. O'Brien, N. Poulter, P. Sever, D. Shields, S. Thom, S. Wannamethee, P. Whincup, M. Brown, J. Connell, R. Dobson, P. Howard, C. Mein, A. Onipinla, S. Shaw-Hawkins, Y. Zhang, G. Smith, I. Day, D. A. Lawlor, A. H. Goodall, F. G. Fowkes, G. R. Abecasis, P. Elliott, V. Gateva, Global BPgen Consortium, P. S. Braund, P. R. Burton, C. P. Nelson, M. D. Tobin, N. Glorioso, H. Neuvrith, E. Salvi, J. A. Staessen, A. Stucchi, N. Devos, X. Jeunemaitre, P-F Plouin, J. Tichet, P. Juhanson, E. Org, M. Putku, S. Sõber, G. Veldre, M. Viigimaa, A. Levinsson, A. Rosengren, D. S. Thelle, C. E. Hastie, T. Hedner, W. K. Lee, O. Melander, B. Wahlstrand, R. Hardy, A. Wong, J. A. Cooper, J. Palmen, L. Chen, A. F.R. Stewart, G. A. Wells, H-J Westra, M. G.M. Wolf, R. Clarke, M. G. Franzosi, A. Goel, A. Hamsten, M. Lathrop, J. F. Peden, U. Seedorf, H. Watkins, W. Ouwehand, J. Sambrook, J. Stephens, J-P Casas, F. Drenos, M. V. Holmes, M. Kivimaki, S. Shah, T. Shah, P. J. Talmud, J. Whittaker, C. Wallace, C. Delles, M. Laan, D. Kuh, S. E. Humphries, F. Nyberg, D. Cusi, R. Roberts, C. Newton-Cheh, L. Franke, A. V. Stanton, A. F. Dominiczak, M. Farrall, A. Hingorani, N. J. Samani, M. J. Caulfield, and P. B. Munroe (2011). "New blood pressure loci identified using a gene-centric array". To appear in the American Journal of Human Genetics (AJHG)
- M. Zazzi, F. Incardona, M. Rosen-Zvi, M. Prosperi, T. Lengauer, A. Altmann, A. Sonnerborg, T. Lavee, E. Schülter, and R. Kaiser (2012). "Predicting Response to Antiretroviral Treatment by Machine Learning: The EuResist Project". Intervirology, 55 pp.123-127
- E. Aharoni, S. Fine, Y. Goldschmidt, O. Lavi, O. Margalit, M. Rosen-Zvi and L. Shpigelman (2011) "Smarter Log analysis". IBM Journal Special Issue Frontiers of IT
- J. P. Bigus, M. Campbell, H. Chang, C. ChenRitzo, J. M. Jasinski, R. K. Sorrentino, S. Ebadollahi, D. Gotz, T. W. A. Grandison, P. S. Hsueh, J. Hu, M. S. Kohn, C. Neti, S. Ramakrishnan, J. Sun, R. Yaesoubi, X. Zhu, B. Carmeli, A. Farkash, H. Nelken, H. Neuvirth, Y. Peres, M. RosenZvi, A. Shabo, M. Cefkin, W. F. Cody, A. Evfimievski, S. Glissmann, D. Gruhl, P. J. Haas, J. H. Kaufman, C. A. Kieliszewski, S. E. Knoop, P. P. Maglio, R. L. Mak, S. Renly, P. Selinger, T. Syeda Mahmood, W. Tan, M. J. H. Hsiao, Y. Pan, Y. Y. Y. Tao. (2011) "Information Technology For Healthcare Transformation". IBM Journal Special Issue Frontiers of IT.
- R. Shamir, M. Ozery-Flato, C. Linhart, L. Trachtenbrot and S. Izraeli (2011), "A systematic assessment of associations among chromosomal aberrations in cancer karyotypes", Genome Biology, 12(6):R61.
- E. Guralnik, M. Aharoni, A. J. Birnbaum, A. Koyfman (2011), "Simulation Based Verification of Floating Point Division", IEEE Transactions on Computers, Volume 60 Issue 2, February 2011, pp. 176-188.
- E. Aharoni, H. Neuvirth-Telem and S. Rosset (2010). "The Quality Preserving Database: A Computational Framework for Encouraging Collaboration, Enhancing Power and Controlling False Discovery". IEEE/ACM Transactions on Computational Biology and Bioinformatics
- M. Zazzi, R. Kaiser, A. Sonnerborg, D. Struck, A. Altmann, M. Prosperi, M. Rosen-Zvi, A. Petroczi, Y. Peres, E. Schulter, C. Boucher, F. Brun-Vezinet, R. Harigan, L. Morris, M. Obermeier, C. F. Perno, R. Shafer, A. Vandamme, K. van Laethem, A. Wensing, T. Lengauer, F. Incardona (2010). "Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE Study)". HIV Medicine 1468-1293, 2010.
- S. Bagchi, R. J. Baseman, A. Davenport, R. Natarajan, N. Slonim, and S. Weiss (2010)."Data Analytics and Stochastic Modeling in a Semiconductor Fab". In Applied Stochastic Models in Business and Industry, 26(1): 1--27.
- M. Rosen-Zvi, C. Chemudugunta, T. Griffiths, P. Smyth, and M. Steyvers (2010) "Learning Author-Topic Models from Text Corpora" , ACM Transactions on Information Systems, TOIS, 28(1).
- Y. Ben-Haim, E. Yom-Tov (2010) "A Streaming Parallel Decision Tree Algorithm", Journal of Machine Learning Research (JMLR), 11: 849-872.
- D. Baras, S. Fine, L. Fournier, D. Geiger, A. Ziv (2010) "Automatic boosting of cross-product coverage using Bayesian networks" International Journal on Software Tools for Technology Transfer (STTT).
- S. Zaman, S. I. Lippman, L. Schneper, N. Slonim, and J. R. Broach (2009). "Glucose Regulates Transcription in Yeast through a Network of Signaling Pathways". In Molecular Systems Biology,5:245, EMBO and Nature Publishing Group.
- M. CF Prosperi, A. Altmann, M. Rosen-Zvi, E. Aharoni, G. Borgulya, F. Bazso, A. Sonnerborg, Y. Peres, E. Schuflter, D. Struck, G. Ulivi, F. Incardona, A.-M. Vandamme, J. Vercauteren and M. Zazzi for the EuResist and Virolab study groups, (2009) "Investigation of Expert Rule Bases, Logistic Regression, and Non-Linear Machine Learning Techniques for Predicting Response to Antiretroviral Treatment" Antiviral Therapy, 14: 433-442.
- A. Altmann, M. Rosen-Zvi, M. Prosperi, E. Aharoni, H. Neuvirth, E. Schulter, J. Buch, D. Struck, Y. Peres, F. Incardona, A. Sonnerborg, R. Kaiser, M. Zazzi, T. Lengauer(2008) "Comparison of Classifier Fusion Methods for Predicting Response to Anti HIV-1 Therapy", PLoS ONE 3(10).
- R. El-Yaniv, D. Pechyony, E. Yom-Tov (2008) "Better Multiclass Classification via a Margin-Optimized Single Binary Problem" Pattern Recognition Letters 29(14): 1954-1959.
- E. Yom-Tov, Y. Aridor (2007) "A self-optimized job scheduler for heterogeneous server clusters" In: E. Frachtenberg, U. Schwiegelshohn (Eds.) (2008) Job Scheduling Strategies for Parallel Processing, Lecture Notes in Computer Science 4942, pp. 169-187, Springer.
- S. Sabato and S. Shalev-Shwartz (2008), "Ranking Categorical Features Using Generalization Properties", Journal of Machine Learning Research 9(Jun):1083-1114, 2008.
- M. Rosen-Zvi, E. Aharoni, A. Altmann, R. Kaiser, T. Lengauer, H. Neuvirth, M. Prosperi, F. Bazso, F. Incardona, M. Zazzi (2007) EuResist: European data - European interpretation systems, European Journal of Medical Research.
- Y. Yom-Tov, S. Yom-Tov, D. MacDonald, and E. Yom-Tov (2007), "Population Cycles and Changes in Body Size of the Lynx in Alaska", Oecologia.
- Y. Richter, Y. Naveh, D. L. Gresh, and D. P. Connors, "Optimatch: Applying Constraint Programming to Workforce Management of Highly-skilled Employees" (2007), International Journal of Services Operations and Informatics (IJSOI), Vol 3, No. 3/4, pp. 258 - 270..
- Y. Naveh, Y. Richter, Y. Altshuler, D. Gresh, and D. Connors (2007), "Workforce Optimization: Identification and Assignment of Professional Workers Using Constraint Programming", accepted for publication in IBM J. R&D.
- S. Fine and Y. Mansour, (2007), "Active sampling for multiple output identification", Machine Learning Journal, Volume 69, Issue 2-3, pp 213-228.
- E. Yom-Tov, Y. Xu, M. Rosen-Zvi, and J. Wong (2007), "A Novel Classification Technique Using Compression-based Similarity with Application to Residual Gas Analysis Data", accepted for presentation in the 8th European AEC/APC Conference.
- D. Baras and R. Meir (2006), "Reinforcement Learning, Spike Time Dependent Plasticity and the BCM Rule", Neural Computation, vol. 19: 2245-2279, 2007.
- S. Fine, A. Freund, I. Jaeger, Y. Mansour, Y. Naveh, and A. Ziv (2006), "Harnessing Machine Learning to Improve the Success Rate of Stimuli Generation". IEEE Trans. Computers 55(11): 1344-1355.
- Y. Naveh, M. Rimon, I. Jaeger, Y. Katz, M. Vinov, E. Marcus, and G. Shurek (2006), "Constraint-Based Random Stimuli Generation for Hardware Verification", AI magazine Vol 28 Number 3.
- S. Copty, S. Fine, S. Ur, E. Yom-Tov, and A. Ziv (2006), "A Probabilistic Alternative to Regression Suites", Theoretical Computer Science 404(3): 219-234.
- D. Pelleg and A. Moore (2005), "Dependency Trees in Sub-linear Time and Bounded Memory", VLDB Journal, Volume 15(3), pp.250-262.
- S. Fine, A. Freund, I. Jaeger, Y. Mansour, Y. Naveh, and A. Ziv (2005), "Harnessing machine learning to improve the success rate of stimuli generation", Proc. High Level Design Validation and Test Workshop (HLDVT) 2005 pp. 112-118. Accepted for publication in IEEE Transactions on Computers, Special Issue on Simulation-Based Validation, pp. 1344-1355, November, 2006

**Conference papers:**

- N. Slonim, E. Aharoni, K. Crammer (2013) "Hartigan's K-means vs. Lloyd's K-means - is it time for a change ?" Accepted to IJCAI 2013
- O. Boni, F. Fournier, N. Mashkif, Y. Naveh, A. Sela, U. Shani, Z. Lando, A. Modai (2012) "Applying Constraint Programming to Incorporate Engineering Methodologies into the Design Process of Complex Systems" Proceedings of the Twenty-Fourth Conference on Innovative Applications of Artificial Intelligence, Toronto, Ontario, Canada. AAAI 2012
- J. Bogojeska, D. Stockel, M. Zazzi, R. Kaiser, F. Incardona, M. Rosen-Zvi, and T. Lengauer (2012). "History-alignment models for bias-aware prediction of virological response to HIV combination therapy". 15th International Conference on Artificial Intelligence and Statistics (AISTATS)
- N. Slonim. B. Carmeli, A. Goldsteen, O. keller, C. Kent, and R. Rinott (2012). "Knowledge-Analytics Synergy in Clinical Decision Support". European Medical Informatics Conference (MIE)
- R. Rinott, M. Torresani, R. Bertulli, A. Goldsteen, P. Casali, B. Carmeli, and N. Slonim (2012). "Automatic Detection of Inconsistencies between Free Text and Coded data in Sarcoma Discharge letters". European Medical Informatics Conference (MIE)
- N. Parush, T. El-Hay, M. Ozery-Flato, L. Ryliskyte, Z. Visockiene, and A. Laucevicius (2012). "Information-Based Sequential Selection of Clinical Tests in Risk Assessment". European Medical Informatics Conference (MIE).
- E. Vitkin, H. Neuvirth-Telem, B. Carmeli, A. Shabo, and A. Farkash (2012). "Bringing research to the point of care: Hypergenes project study". European Medical Informatics Conference (MIE)
- R. Rinott, B. Carmeli, C. Kent, Y. Maman, Y. Rubin, and N. Slonim (2012). "Utilizing Assigned Treatments as Labels for Supervised Machine Learning in Clinical Decision Support". to be presented at 2nd ACM SIGHIT International Health Informatics Symposium (IHI)
- R. Rinott, B. Carmeli, C. Kent, D. Landau, Y. Maman, Y. Rubin, and N. Slonim (2011). "Prognostic Data-Driven Clinical Decision Support - Formulation and Implications" 23rd International Conference of the European Federation for Medical Informatics
- E. Bin, O. Biran, O. Boni, E. Hadad, E. K. Kolodner, Y. Moatti, D. H. Lorenz (2011), "Guaranteeing High Availability Goals for Virtual Machine Placement", accepted to ICDCS 2011
- H. Neuvirth, M. Ozery-Flato, J. Laserson, M. Rosen-Zvi, J. Hu, M. S. Kohn, S. Ebadollahi (2011). "Toward personalized care management of patients at risk - The diabetes case study", the 17th ACM SIGKDD international conference on Knowledge discovery and data mining
- N. Slonim, E. Yom-Tov and K. Crammer (2011), "Active online classification via information maximization", Twenty Second International Join Conference Artificial intelligence
- A. Farkash, H. Neuvirth-Telem, Y. Goldschmidt, C. Conti, F. Rizzi, S. Bianchi, E. Salvi, D. Cusi, A. Shabo(2011), "A Standard Based Approach for Biomedical Knowledge Representation", XXIII International Conference of the European Federation for Medical Informatics
- Y. Naveh (2010). "The Big Deal, Applying Constraint Satisfaction Technologies Where it Makes the Difference". Proceedings of the Thirteenth International Conference on Theory and Applications of Satisfiability Testing (SAT'10).
- S. Asaf, H. Eran, Y. Richter, D. P Connors, D. L. Gresh, J. Ortega, M. J. Mcinnis (2010). "Applying Constraint Programming to Identification and Assignment of Service Professionals". Accepted for presentation in The 16th International Conference on Principles and Practice of Constraint Programming (CP2010). The paper received the Best Application Paper Award.
- D. Gutfreund and A. Kawachi (2010). "Derandomizing Arthur-Merlin Games and Approximate Counting Implies Exponential-Size Lower Bounds". In Proceedings of the 25th IEEE Conference on Computational Complexity (CCC 2010).
- C. Eggenberger, S. Klein, M. Moser, K. Stanoevska-Slabeva, M. Fruhwirth, A. K. Baughman, E. Hietler, P. Malkin, M. Rosen-Zvi, M. Soimu, and P. T. Sorenson (2010) "The HiGrid Vision - A Tightrope Walk" In the third international conference on Well-Being in the Information Society (WIS 2010).
- S. Asaf, H. Eran, Y. Richter, D. P Connors, D. L. Gresh, J. Ortega, M. J. Mcinnis (2010). "Applying Constraint Programming to Identification and Assignment of Service Professionals", in Proceedings of the 16th International Conference on Priniciples and Practice of Constraint Programming (CP'10), Edited by David Cohen, pp 24-37.
- A. Ronen, D. Pelleg, E. Raichstein (2010) " Using Machine Learning Techniques to Enhance the Performance of an Automatic Backup and Recovery System", Systor 2010.
- Y. Richter, E. Yom-Tov, N. Slonim (2010) "Predicting customer churn in mobile networks through analysis of social groups" Proceedings of the 2010 SIAM International Conference on Data Mining (SDM 2010) pp. 732-741.
- B. Dubrov, H. Eran, A. Freund, E. F. Mark, S. Ramji, and T. A. Schell, (2009). "Pin Assignment Using Stochastic Local Search Constraint Programming" in Proceedings of the 15th International Conference on Priniciples and Practice of Constraint Programming (CP'09), Edited by Ian P. Gent, pp 35-49.
- E. Yom-Tov, D. Carmel, H. Roitman (2009) "Who Tags the Tags? A Framework for Social Bookmarking" Proceedings of the 2009 Conference on Information and Knowledge Management (CIKM), Hong-Kong, China. pp. 1577-1580.
- E. Yom-Tov, N. Slonim (2009) "Parallel Pairwise Clustering" Proceedings of the 2009 SIAM International Conference on Data Mining (SDM 2009), Reno, NV. pp.745-755.
- E. Vitkin, B. Carmeli, O. Greenshpan, D. Baras, Y. Marmor, MEDAL: Measuring of Emergency Departments Adaptive Load (2009) - MedInfo2010, Proceedings of the 13th World Congress on Medical Informatics (MEDINFO 2010), Volume 160, 218-222. Won 3rd place on best student paper award. An extended version - IBM research report H-270.
- E. Vitkin, B. Carmeli, O. Greenshpan, D. Baras, Y. Marmor, MEDAL: Measuring of Emergency Departments Adaptive Load (2009) presentated at SMRLO'10.
- M. Ben-Yehuda, D. Breitgand, M. Factor, H. Kolodner, D. Pelleg and V. Kravtsov (2009), NAP: Black-box Network Analysis for Remediating Performance Bottlenecks, International Conference on Autonomic Computing and Communications.
- Y. Adler, E. Farchi, M. Klausner, D. Pelleg, O. Raz, M. Shochat, S. Ur and A. Zlotnick (2009), "Advanced Code Coverage Analysis Using Substring Holes",International Conference on Software Testing and Analysis (ISSTA).
- S. Hoory, O. Margalit (2008) "Finding the Rare Cube", ALT 2008 pp 345--359.
- D. Bickson, E. Yom-Tov, D. Dolev (2008) "A Gaussian Belief Propagation Solver for Large Scale Support Vector Machines". Proceedings of the 5th European Conference on Complex Systems (ECCS 2008).
- H. Roitman, D. Carmel, E. Yom-Tov (2008) "Maintaining Dynamic Channel Profiles on the Web" . Proceedings of the 34th International Conference on Very Large Data Bases (VLDB 2008), Auckland, New-Zealand. pp. 151-162.
- E. Yom-Tov, R. Tzoref, S. Ur, S. Hoory (2008) "Automatic debugging of concurrent programs through active sampling of low dimensional random projections". Proceedings of the 23rd IEEE/ACM International Conference on Automated Software Engineering (ASE 2008), L'Aquila, Italy. pp. 307-316.
- D. Baras, L. Fournier, A.Ziv (2008)"Automatic Boosting of Cross-Product Coverage Using Bayesian Networks", HVC 2008.
- D. Pelleg, M. Ben-Yehuda, R. Harper, L. Spainhower, and T. Adeshiyan (2008), Vigilant: out-of-band detection of failures in virtual machines, ACM SIGOPS Operating Systems Review, 42(1): 26-31.
- A. Gruber, M. Rosen-Zvi and Y. Weiss (2008), "Latent Topic Models for Hypertext". Proceedings of the 24th Conference on Uncertainty in Artificial Intelligence.
- M. Rosen-Zvi, A. Altmann, M. Prosperi, E. Aharoni, H. Neuvirth, A. Sonnerborg, E. Shulter, D. Struck, Y. Peres, F. Incardona, R. Kaiser, M. Zazzi, T. Lengauer (2008), "Selecting anti-HIV therapies based on a variety of genomic and clinical factors", Accepted for an oral presentation at the ISMB conference/ bioinformatics journal Toronto 2008.
- S. Wasserkrug, Y. Richter, and D. Gilat (2008), "Models for Manpower Planning at Different Time Horizons", The 15th Industrial Engineering and Management Conference (IE & M), Tel Aviv, Israel.
- D. Carmel, E. Yom-Tov, H. Roitman (2008) "Enhancing Digital Libraries Using Missing Content Analysis". Proceedings of the Joint Conference on Digital Libraries (JCDL 2008), Pittsburgh, Pennsylvania. pp. 1-10.
- O. Margalit, A. Ticknor, R. J. Baseman (2008), "Semi-Automatic Detection of Tool Variability", 9th European AEC/APC Conference, Tel-Aviv, Israel, April 2008.
- A. Freund, D. Pelleg, and Y. Richter (2008), "Clustering from Constraint Graphs", Siam Conf. on Data Mining (SDM).
- E. Aharoni, A. Altman, G. Borgulya, R. D'Autilia, F. Incardona, R. Kaiser, C. Kent, T. Lengauer, H. Neuvirth, Y. Peres, A. Petroczi, M. Prosperi, M. Rosenzvi, E. Schulter, T. Sing, A Sonnenborg, R Thompson, M Zazzi, (2007) Integration of viral genomics with clinical data to predict response to anti-HIV treatment. IST-Africa 2007 Conference & Exhibition, May 9-11, 2007, Maputo, Mozambique.
- Y. Richter, Y. Naveh, D. L. Gresh, and D. P. Connors (2007), "Optimatch: Applying Constraint Programming to Workforce Management of Highly-skilled Employees", IEEE/INFORMS International Conference on Service Operations and Logistics, and Informatics (SOLI), Philadelphia, pp. 173-178.
- S. Sabato and Y. Naveh (2007), "Preprocessing Expression-based Constraint Satisfaction Problems for Stochastic Local Search", Proceedings of The Fourth International Conference on Integration of AI and OR Techniques in Constraint Programming for Combinatorial Optimization Problems (CP-AI-OR).
- A. Gruber, M. Rosen-Zvi and Y. Weiss (2007) "Hidden Topic Markov Models", Artificial Intelligence and Statistics (AISTATS), San Juan, Puerto Rico, March 2007.
- M. Rosen-Zvi, W. Muth, S. G. Conti, F. A. Scholl, R. J. Baseman, (2008), "Learning with Bayesian networks from in-line metrology sampling data" accepted for presentation in the 9th European AEC/APC Conference.
- D. Pelleg and D. Baras (2007), "K-means with Large and Noisy Constraint Sets", to appear in Proceedings of the eighteenth European Conference on Machine Learning (ECML 2007) Lecture Notes in Computer Science 4701, pp. 674-682, Springer 2007. Extended version: IBM Research Report H-0253.
- E. Yom-Tov and Y. Aridor (2007), "A self-optimized job scheduler for heterogeneous server clusters" 13th Workshop on Job Scheduling Strategies for Parallel Processing (JSSPP) 2007.
- R. Tzoref, S. Ur, and E. Yom-Tov (2007), "Instrumenting Where it Hurts - An Automatic Concurrent Debugging Technique" Accepted for presentation at The International Symposium on Software Testing and Analysis (ISSTA) 2007.
- S. Sabato and S. Shalev-Shwartz (2007), "Prediction by categorical features: generalization properties and application to feature ranking", Proceedings of The Twentieth Annual Conference on Learning Theory (COLT 2007).
- E. Yom-Tov and Y. Aridor, (2006), "Improving Resource Matching Through Estimation of Actual Job Requirements", 15th IEEE International Symposium on High Performance Distributed Computing (HPDC 2006), Paris, France. pp. 367-368.
- E. Yom-Tov, D. Carmel, A. Darlow, and D. Pelleg (2006), "What makes a query difficult?", 29th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR 2006), Seattle, Washington. pp. 390-397.
- S. Ur, E. Yom-Tov, and P. Wernick (2006), "An Open Source Simulation Model of Software Testing", Haifa Verification Conference. Lecture Notes in Computer Science 2007, volume 4383 (124-137).
- D. Baras and R. Meir (2006), "Reinforcement Learning, Spike Time Dependent Plasticity and the BCM Rule", CNS 2007. BMC Neuroscience 2007, 8(Suppl 2):P197.
- S. Fine and Y. Mansour (2006), "Active Sampling for Multiple Output Identification", COLT 2006: 620-634.
- T. Savag, S. Fine, and Y. Mansour (2006), "Combining Multiple Heuristics", STACS 2006: 242-253.
- Y. Naveh, M. Rimon, I. Jaeger, Y. Katz, M. Vinov, E. Marcus, and G. Shurek (2006), "Constraint-Based Random Stimuli Generation for Hardware Verification", IAAI 2006.
- Y. Richter, A. Freund, and Y. Naveh (2006), "Generalizing AllDifferent: The SomeDifferent constraint", : Proceedings of the 12 International Conference on Principles and Practice of Constraint Programming - CP 2006, Lecture Notes in Computer Science, Volume 4204, pages 468-483.
- F. Geller and M. Veksler, "Assumption-based pruning in conditional CSP" (2005), in van Beek, P., ed., CP, "Principles and Practice of Constraint Programming - CP 2005" of Lecture Notes in Computer Science (3709), 241-255 Springer.
- E. Yom-Tov, S. Fine, D. Carmel, and A. Darlow (2005), "Learning to Estimate Query Difficulty with Applications to Missing Content Detection and Distributed Information Retrieval", The 28th Annual International ACM SIGIR Conference, SIGIR2005, Won best paper award.
- S. Fine, S. Ur, and A. Ziv (2004), "Probabilistic Regression Suites for Functional Verification", Proceedings of the 41st annual conference on Design automation, San Diego, CA, USA, pp. 49-54.
- M. Braun, S. Fine, and A. Ziv (2004), "Enhancing Efficiency of Bayesian Network based Coverage Directed Test Generation", Proc. High Level Design Validation and Test Workshop (HLDVT) 2004, pp. 75-80.
- S. Copty, S. Fine, S. Ur, and A. Ziv (2004), "Probabilistic Alternative Regression Suites", 1st International Symposium on Leveraging Applications of Formal Methods, Cyprus.
- E. Yom-Tov, S. Fine, D. Carmel, A. Darlow, and E. Amitay (2004), "Improving document retrieval according to prediction of query difficulty", TREC report, Text Retrieval Conference, Gaithersburg, MD, USA.
- S. Fine and A. Ziv (2003), "Enhancing the Control and Efficiency of the Covering Process", Proc. High-level Design, Verification and Testing Workshop (HLDVT), pp. 96-101.
- S. Fine and A. Ziv (2003), "Coverage Directed Test Generation for Functional Verification using Bayesian Networks" Proceedings of the 40th Design Automation Conference, pp. 286-291.
- M. Aharoni, S. Asaf, L. Fournier, A. Koifman, R. Nagel (2003), "FPgen - A Test Generation Framework for Datapath Floating-Point Verification". In Proc. IEEE International High Level Design Validation and Test Workshop 2003 (HLDVT03)
- A. Ziv, M. Aharoni, S. Asaf (2003), "Solving Range Constraints for Binary Floating-Point Instructions", In proc. ARITH16, 2003, pp 158-164,
- D. Malandain, P. Palmen, M. Taylor, M. Aharoni, Y. Arbetman (2002), "An effective and flexible approach to functional verification of processor families", High-Level Design Validation and Test Workshop, 2002.
- G. Nativ, S. Mittermaier, S. Ur, and A. Ziv (2001), "Cost Evaluation of Coverage Directed Test Generation for the IBM Mainframe", Proc. of the International Test Conference (ITC), pp. 793-802.

**Workshops:**

- Y. Ben-Haim, A. Ivrii, O. Margalit and A. Matsliah (2012) "Perfect Hashing and CNF Encodings of Cardinality Constraints" Second International Workshop on the Cross-Fertilization Between CSP and SAT" in conjunction with SAT 2012, Trento, Italy, http://sysrun.haifa.il.ibm.com/hrl/cspsat2012/
- R. Shamir, M. Ozery-Flato, C. Linhart, L. Trachtenbrot and S. Izraeli (2011), "A systematic assessment of associations among chromosomal aberrations in cancer karyotypes", presented at RECOMB-CCB
- M. Rosen-Zvi, M. Zazzi, F. Incardona, E. Aharoni, R. Kaiser, T. Lengauer, B. Clotet, A. M. Vandamme, J. C, Schmit A, Sonnerborg, (2011) "Declining differences in treatment outcome among different patient categories in Europe, 1992-2010", 9th European Workshop on HIV & Hepatitis - Treatment Strategies & Antiviral Drug Resistance March 2011, Cyprus.
- Y. Goldschmidt, I. Eiron, B. Sznajder and M. Rosen-Zvi (2010) "Author-Topic Models for Recommendation Tasks" in ICML/COLT 2010 Workshop on topic models.
- M. Zazzi, R. Kaiser, A, Sonnerborg, D, Struck, A, Altmann, M, Prosperi, M, Rosen-Zvi, A, Petroczi, Y, Peres, , E. Schulter, F. Boucher, Brun-Vezinet, PR Harrigan, L. Morris, M. Obermeier, CF. Perno, P. Phanuphak, D. Pillay, RW. Shafer, AM. Vandamme, K. Van Laethem, A.M. Wensing, T. Lengauer, F. Incardona, (2010) "Prediction of response to antiretroviral therapy by human experts and by the EuResist data-driven expert system (the EVE study)", 8th European HIV Drug Resistance Workshop, March, Italy.
- M. Prosperi, M. Rosen-Zvi, A. Altmann, E. Aharoni, Y. Peres, A. Sonnerborg, F. Incardona, D. Struck, R. Kaiser, M. Zazzi, (2009) "Therapy Optimisation without Genotype Resistance Testing: a Perspective on Treatment History Based Models" Proceedings of the 7th European HIV Drug Resistance Workshop.
- Y. Ben-Haim, E. Yom-Tov, (2008)"A streaming parallel decision tree algorithm". PASCAL Large Scale Learning Challenge, ICML 2008 Workshop, Helsinki, Finland, July 2008.
- M. Rosen-Zvi, E. Shulter, A. Altman, S. Sierra-Aragon, M. Zazzi, A. Sonnerborg, T. Lengauer, R. Kaiser(2008), "Sustaining 3TC/FTC, ABC, AZT or ATV from a previous treatment shows a clinical benefit", Accepted for a poster presentation at the XVII International HIV Drug Resistance Workshop, Sitges 2008.
- A. Altmann, M. Rosen-Zvi, M. Prosperi, E. Aharoni, H. Neuvirth, E. Shulter, J. Buch, Y. Peres, F. Incardona, A. Sonnerborg, R. Kaiser, M. Zazzi, T. Lengauer (2008), "The EuResist approach for predicting response to anti HIV-1 therapy" Accepted for an oral presentation at the 6th European HIV Drug Resistance Workshop, Cascais, Portugal 2008.
- M. Zazzi, E. Aharoni, A. Altmann, F. Bazso, P. Bidgood, G. Borgulya, J. Denholm-Prince, M. Fielder, R. Kaiser, C. Kent, T. Lengauer, T. Nepusz, H. Neuvirth, Y. Peres, A. Petroczi, M. Prosperi, L. Romano, M. Rosen-Zvi, E. Shulter, T. Sing, A. Sonnerborg, R. Thompson, G. Ulivi, L. Zalányi, F. Incardona, (2007) EuResist: exploration of multiple modeling techniques for prediction of response to treatment. Proceedings of the 5th European HIV Drug Resistance Workshop, March 29, 2007, Cascais, Portugal.
- E. Yom-Tov, D. Pelleg, R. Natarajan, E. Pednault, N. Slonim (2007) "Large scale clustering and regression using the IBM Parallel Machine Learning toolbox" Neural Information Processing Systems (NIPS) 2007 Workshop on Efficient Machine Learning, Whistler, Canada.
- H. Leather, E. Yom-Tov, M. Namolaru, A. Freund (2008) "Automatic Feature Generation for Setting Compilers Heuristics" 2nd Workshop on Statistical and Machine learning approaches to ARchitectures and compilaTion (SMART'08).
- E. Amitay, S. Yogev, and E. Yom-Tov (2007), "Serial Sharers: Detecting Split Identities of Web Authors" Accepted for presentation at the SIGIR Workshop on Plagiarism Analysis, Authorship Identification, and Near-Duplicate Detection, 2007.
- S. Sabato, E. Yom-Tov, A. Tsherniak, and S. Rosset (2007), "Analyzing System Logs: A New View of What's Important", accepted for presentation in the Second Workshop on Tackling Computer Systems Problems with Machine Learning Techniques (SysML07).
- M. Rosen-Zvi, H. Neuvirth, E. Aharoni, M. Zazzi, and N. Tishby (2006), "Consistent dimensionality reduction scheme and its application to clinical HIV data", NIPS 2006 workshop poster: "Novel applications of dimensionality reduction".
- H. Neuvirth , M. Rosen-Zvi, N. Srebro, E. Aharoni, M. Zazzi, and N. Tishby (2006), "Improved Prediction of HIV Resistance In-Vitro by Biochemically-Driven Models", NIPS 2006 workshop talk: "New Problems and Methods in Computational Biology".
- S. Copty, S. Ur, and E. Yom-Tov (2005), "Evaluating the Reverse Greedy Algorithm", Fifth Haifa Workshop on Interdisciplinary Applications of Graph Theory, Combinatorics and Algorithms.
- Y. Naveh, "Stochastic solver for constraint satisfaction problems with learning of high-level characteristics of the problem topography" (2004), in Local Search Techniques in Constraint Satisfaction (LSCS-04).
- S. Fine and A. Ziv (2004), "On the Application of Bayesian Networks for Simulation-based Verification", The second Bayesian modeling applications workshop of Uncertainty in Artificial Intelligence, Banff, Canada.

**Book Chapters:**

- M. Rosen-Zvi, E. Aharoni, and J. Selbig, (2009) "HIV-1 Drug Resistance Prediction and Therapy Optimization: A Case Study for the Application of Classification and Clustering Methods" M. Biehl et al.: (Eds.): Similarity-Based Clustering, LNAI 5400, pp. 185-201, Springer-Verlag Berlin Heidelberg.
- E. Yom-Tov (2009) "Machine learning techniques for large data" In: R. Rao, G. Cecchi: High-throughput image reconstruction and analysis: intelligent microscopy applications Artech House: 161-177.
- E. Yom-Tov (2007) "A distributed sequential solver for large scale SVMs" In: O. Chapelle, D. DeCoste, J. Weston, L. Bottou Large scale kernel machines MIT Press: 141-156.
- R. Bar-Yehuda, K. Bendel, A. Freund, and D. Rawitz (2005), The local ratio technique and its application to scheduling and resource allocation problems, In M.C. Golumbic, I.B-A. Hartman (eds.), Graph Theory, Combinatorics and Algorithms. Springer 2005, pp. 107-143.
- E. Yom-Tov (2004), "Introduction to Pattern Classification", in Advanced Lectures on Machine Learning - ML Summer Schools 2003. Bousquet O., Luxburg U.v., Raetsch G. (Eds.), Springer.

**Misc:**

- M. Ozery-Flato, H. Neuvirth, J. Laserson, M. Rosen-Zvi, J. Hu, M. S. Kohn, S. Ebadollahi (2011),"Identification patients at risk: methods and application", invited talk, INFORMS healthcare 2011
- G. Ouimet, H. Lin, J. W. Andrews, A. Ticknor, M. R. Biagetti, R. J. Baseman, A. Dhurandhar, M. Ozery-Flato, N. Parush, and S. A. Siegel, "Tracer Tool Stability Application Utilization of Equipment Trace Data in a 300mm Semiconductor Fabricator" was presented at ISMI manufacturing week 2010
- E. Aharoni, D. Baras, R. J. Baseman, M. Ozery-Flato, N. Parush, N. Slonim, and E. Yashchin, "Analytics Customized for Detection of Irregularities in Trace Data" was presented at AEC/APC Symposium 2010
- H. Neuvirth-Telem, E. Aharoni, C. A. Azencott, A. Farkash, D. Landau, M. Rosen-Zvi and D. Geiger (2010). "Inferring Distributions of Trait-Associated SNPs with Application to Genetic Association Studies". ECCB poster.
- H. Toledano, E. Yom-Tov, D. Pelleg, E. Pednault, R. Natarajan (2008) "Support Vector Machine Solvers: Large-scale, Accurate, and Fast (Pick Any Two)", IBM Research Report H-0260.
- D. Pelleg(2006), "Learning Rules of Thumb", IBM Research Report H-0255.
- R. El-Yaniv, D. Pechyony, and E. Yom-Tov (2006), "Superior Multi-Class Classification through a Margin-Optimized Single Binary Problem", IBM Research Report H-0243.
- E. Yom-Tov and Y. Aridor (2006), "Improving Resource Matching through Estimation of Actual Job Requirements", IBM Research Report H-0244.
- R. El-Yaniv, T. Kotek, D. Pechyony, and E.Yom-Tov (2006), "On Multiclass Classification via a Single Binary Classifier", IBM Research Report H-0241.
- E. Yom-Tov (2006), Field editor for the "Encyclopedic reference of Neuroscience", Springer, 2006.