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References

[1] Califano, Andrea. 1999. "SPLASH: Structural Pattern Localization and Analysis by Sequential Histograms."  in print in Bioinformatics.

[2] Stolovitzky G. and Califano A., 1998, "Statistical Significance of Patterns in Biosequences," IBM RC

[2] Hart R., Royyuru A., Stolovitzky G., Califano A., 1999, "Systematic and Automated Discovery of Patterns in PROSITE Families, communicated to RECOMB 2000 on 9/30/99

[3] Liu A., Stolovitzky G., Royyuru A., Hart. R., and Califano A., 1999, G-Protein Coupled Receptor: Automated functional clustering using pattern discovery, 1999 TIGR 3rd Annual Conference on Computational Genomics

[4] Rzhetsky A., Grundy W.N., Riemann R, and Califano A., 2000, "An investigation of distant homology detection methods for multidomain protein families" submitted to ISMB 2000

[5] Liu A. and Califano A., 2000, "Functional Classification of Proteins by Pattern Discovery and Top-Down Clustering of Primary Sequences", submitted to PSB 2001 .

0. SPLASH
1. Algorithm
2. Performance
3. Pattern Discovery

Syntax
DNA/Protein Seq.
Constraints
Statistical Constr.
Similarity Matrix
Parallel Execution
Output Format
Other

4. Exhaustive Discovery

Syntax

5. Hierarchical Discovery

Syntax

6. Search

Syntax

7. References