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DNA/Protein Sequences

Protein Sequence: IMPORTANT, it is possible to run against protein sequences using the -i option. However, this results in patterns that only allow identity token matches. It is suggested not to use this option with protein sequences

DNA Sequences: IMPORTANT, to run against a set of DNA sequences, make sure that the -i option is used.

0. SPLASH
1. Algorithm
2. Performance
3. Pattern Discovery

Syntax
DNA/Protein Seq.
Constraints
Statistical Constr.
Similarity Matrix
Parallel Execution
Output Format
Other

4. Exhaustive Discovery

Syntax

5. Hierarchical Discovery

Syntax

6. Search

Syntax

7. References