|
| Option |
-Z minZScore |
| Default |
-Z -inf |
| Description |
Reported patterns must have a zscore at least equal
to minZScore |
| Option |
-FP maxFP |
| Default |
-FP inf |
| Description |
Reported pattern must have an expected number of
false positive matches in a database with the same size and amino
acid frequency of SWISS-PROT Rel. 36. The latter is computed by
using the product of the probability of matching the individual
amino acids or amino acid classes contained in the pattern. |
|
|
0. SPLASH
1. Algorithm
2. Performance
3. Pattern Discovery
Syntax
DNA/Protein Seq.
Constraints
Statistical Constr.
Similarity Matrix
Parallel Execution
Output Format
Other
4. Exhaustive Discovery
Syntax
5. Hierarchical Discovery
Syntax
6. Search
Syntax
7. References
|
