|
| Option |
-mn matrix_name |
| Default |
-mn BLOSUM50 |
| Description |
This option defines the matrix used to define similarity
classes based on the file matrix_name. The latter must
be contained in the matrix subdirectory of the directory where
Splash is run |
| Option |
-mt similarity_threshold |
| Default |
-mt 1.0 |
| Description |
This option sets the threshold used to define similarity
classes |
|
|
0. SPLASH
1. Algorithm
2. Performance
3. Pattern Discovery
Syntax
DNA/Protein Seq.
Constraints
Statistical Constr.
Similarity Matrix
Parallel Execution
Output Format
Other
4. Exhaustive Discovery
Syntax
5. Hierarchical Discovery
Syntax
6. Search
Syntax
7. References
|
