SPAT-Related Publications

Systematic and Fully Automatic Identification of Protein Sequence Patterns
Hart RK, Royyuru AK, Stolovitzky G, Califano A
J. Comput. Biol. 7 (3/4): 585-600 (2000).
abstract | gzip'd PostScript (189KB) | PDF (336KB)

The most recent description of the method, a detailed comparison with PROSITE patterns, and example of exhaustive discovery of all meaningful patterns in the trypsin subfamily of serine proteases.

Automatic Generation of PROSITE Motifs Using Splash
Hart RK, Royyuru AK, Stolovitzky G, Califano A
RECOMB 2000, Tokyo, Japan

A preliminary account of the results described above and to be presented at the RECOMB 2000 conference.

Pattern Statistics in Biological Datasets
Stolovitzky G, Califano A
IBM Research Communication PDF (152KB)

SPLASH: Structural Pattern Localization by Sequential Histograms
Califano A
Bioinformatics 16: 341-57 (2000).