About SPAT

Welcome to SPAT, a library of Sequence PATterns in PROSITE families. SPATs are generated by applying the Splash pattern discovery algorithm to PROSITE families. Details are presented in:
Systematic and Fully Automatic Identification of Protein Sequence Patterns
Hart RK, Royyuru AK, Stolovitzky G, Califano A
J. Comput. Biol. 7 (3/4): 585-600 (2000).
abstract | gzip'd PostScript (189KB) | PDF (336KB)

SPAT is offered to the scientific community as a public resource. We appreciate all feedback; please send your comments to Reece Hart (contact information).

SPAT was developed using Linux, gcc/egcs, perl, AIX, and xlC.


URL: http://www.research.ibm.com/spat/