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Alice Carolyn McHardy, PhD
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I joined
the Bioinformatics and
Pattern Discovery Group at the T.J. Watson Research Center in January, 2005 as a postdoctoral
researcher. For a list of my research interests and related things, see below.
Research interests
- Analysis of metagenomic data
- Comparative genomics
- Prokaryotic gene identication
- Horizontal gene transfer (HGT)
- Genome annotation and
Annotation Systems
Curriculum vitae
- 03/04:
PhD, Computer Science, Technical Department, Bielefeld University, Germany
- 11/00:
Diploma (MS), Biochemistry, Department of Chemistry, Bielefeld University, Germany
Publications
- Thieme, F., Koebnik,
R., Bekel, T., Berger, C., Boch,
J., Büttner, D., Caldana,
C, Gaigalat, L., Goesmann,
A., Kay, S., Kirchner, O., Lanz, C., Linke, B., McHardy, A.C.,
Meyer, F., Mittenhuber, G., Nies,
D. H., Niesbach-Klösgen, U., Patschkowski,
T., Rückert, C., Rupp, O., Schneiker,
S., Schuster, S.C., Vorhölter, F., Weber, E., Pühler, A., Bonas, U.,
Bartels, D. and Kaiser, O. (2005), Novel insights into genome plasticity
and pathogenicity of the plant pathogenic
bacterium Xanthomonas campestris
pv. vesicatoria revealed
by the complete genome sequence, J. Bac., in press
- A.C. McHardy,
A. Goesmann, A. Puehler,
F. Meyer (2004). Development of joint application strategies for two
microbial gene finders, Bioinformatics,
20:1622-31
·
A.C.
McHardy, J. Kalinowski, A. Puehler, F. Meyer (2004). Comparing expression
level-dependent features in codon usage with protein
abundance: An analysis of predictive proteomics, Proteomics 4: 46-58
·
Wilke, C. Rueckert, D. Bartels, M. Dondrup, A. Goesmann, A. Hueser, S. Kespohl, B. Linke, M. Mahne, A.C. McHardy, A. Puehler, F. Meyer
(2003). Bioinformatics support for high-throughput proteomics, J. Biotechnol.
106: 147-56
·
Goesmann, B. Linke, O. Rupp, L. Krause, D.
Bartels, M. Dondrup, A.C. McHardy,
A. Wilke, A. Puehler, F. Meyer
(2003). Building a BRIDGE for the integration of heterogeneous data from
functional genomics into a platform for systems biology, J. Biotechnol. 106: 157-67
·
J.
Kalinowski, B. Bathe, D. Bartels, N. Bischoff, M. Bott, A. Burkovski, N. Dusch, L. Eggeling, B.J. Eikmanns, L. Gaigalat, A. Goesmann, M. Hartmann, K. Huthmacher,
R. Kraemer, B. Linke, A.C. McHardy,
F. Meyer, B. Mockel, W. Pfefferle,
A. Puehler, D.A. Rey, C. Rueckert, O. Rupp, H. Sahm, V.F. Wendisch, I. Wiegraebe, A. Tauch (2003). The complete Corynebacterium glutamicum ATCC
13032 genome sequence and its impact on the production of L-aspartate-derived
amino acids and vitamins, J. Biotechnol. 104: 5-25
·
A.C.
McHardy, A. Tauch, C. Rueckert, A. Puehler, J. Kalinowski (2003). Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicum, J. Biotechnol. 104:
229-40
- F. Meyer, A. Goesmann, A.C. McHardy, D.
Bartels, T. Bekel, J. Clausen, J. Kalinowski, B. Linke, O.
Rupp, R. Giegerich, A. Puehler
(2003). GenDB--an open source genome annotation
system for prokaryote genomes, Nucleic
Acids Res. 31: 2187-95
Awards
- ISMB
Best Poster Award, 2002: Alice McHardy, Jan Kleinluetzum and Folker
Meyer, Expert-system based annotation strategies using GenDB, an open source genome annotation system.
Alice Carolyn McHardy, PhD
Bioinformatics & Pattern Discovery Group
Computational Biology Center
IBM Thomas J. Watson Research Center
PO Box 218
Yorktown Heights, NY 10598, U.S.A.
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Phone: +1-914-945-1394
Fax: +1-914-945-4104
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