IBM Systems Journal - Contents of Volume 40, 2001 Number One (G321-0140) Trends in e-business technologies 4 R. A. Smith The IBM Application Framework for e-business 8 G. Flurry and W. Vicknair WebSphere as an e-business server 25 D. F. Ferguson and R. Kerth CICS and Enterprise JavaBeans 46 A. Bainbridge, J. Colgrave, A. Colyer, and G. Normington Business-to-business integration with tpaML and a 68 business-to-business protocol framework A. Dan, D. M. Dias, R. Kearney, T. C. Lau, T. N. Nguyen, F. N. Parr, M. W. Sachs, and H. H. Shaikh IBM WebSphere Commerce Suite Product Advisor 91 J. J. Rofrano Java Management Extensions for application management 104 H. Kreger Security challenges for Enterprise Java in an e-business environment 130 L. Koved, A. Nadalin, N. Nagaratnam, M. Pistoia, and T. Shrader Transcoding: Extending e-business to new environments 153 K. H. Britton, R. Case, A. Citron, R. Floyd, Y. Li, C. Seekamp, B. Topol, and K. Tracey Intermediary-based transcoding framework 179 S. C. Ihde, P. P. Maglio, J. Meyer, and R. Barrett Application hosting for pervasive computing 193 S. G. Hild, C. Binding, D. Bourges-Waldegg, and C. Steenkeste In-process metrics for software testing 220 S. H. Kan, J. Parrish, and D. Manlove Number Two (G321-0141) Deep computing for the life sciences 248 W. C. Swope Computational challenges in structural and functional genomics 265 T. Head-Gordon and J. C. Wooley Computational protein folding: From lattice to all-atom 297 Y. Duan and P. A. Kollman Blue Gene: A vision for protein science using a petaflop 310 supercomputer IBM Blue Gene team Load balancing of molecular dynamics simulation with NWChem 328 T. P. Straatsma and J. A. McCammon Mapping, modeling, and visual exploration of structure-function 342 relationships in the heart R. L. Winslow, D. F. Scollan, J. L. Greenstein, C. K. Yung, W. Baumgartner, Jr., G. Bhanot, D. L. Gresh, and B. E. Rogowitz Large-scale virtual screening for discovering leads in the 360 postgenomic era B. Waszkowycz, T. D. J. Perkins, R. A. Sykes, and J. Li Functional classification of proteins by pattern discovery and 379 top-down clustering of primary sequences A. H. Liu and A. Califano Intelligent decision support for protein crystal growth 394 I. Jurisica, P. Rogers, J. I. Glasgow, S. Fortier, J. R. Luft, J. R. Wolfley, M. A. Bianca, D. R. Weeks, and G. T. DeTitta Convergent evolution of protein structure prediction and computer 410 chess tournaments: CASP, Kasparov, and CAFASP N. Siew and D. Fischer New techniques for extracting features from protein sequences 426 J. T. L. Wang, Q. Ma, D. Shasha, and C. H. Wu Fastfinger: A study into the use of compressed residue pair 442 separation matrices for protein sequence comparison B. Robson A high-throughput distributed DNA sequence analysis and database 464 system J. T. Inman, H. R. Flores, G. D. May, J. W. Weller, and C. J. Bell DiscoveryLink: A system for integrated access to life sciences data 489 sources L. M. Haas, P. M. Schwarz, P. Kodali, E. Kotlar, J. E. Rice, and W. C. Swope K2/Kleisli and GUS: Experiments in integrated access to genomic data 512 sources S. B. Davidson, J. Crabtree, B. P. Brunk, J. Schug, V. Tannen, G. C. Overton, and C. J. Stoeckert, Jr. Transparent access to multiple bioinformatics information sources 532 C. A. Goble, R. Stevens, G. Ng, S. Bechhofer, N. W. Paton, P. G. Baker, M. Peim, and A. Brass GeneX: An Open Source gene expression database and integrated tool 552 set H. Mangalam, J. Stewart, J. Zhou, K. Schlauch, M. Waugh, G. Chen, A. D. Farmer, G. Colello, and J. W. Weller An integration platform for heterogeneous bioinformatics software 570 components A. C. Siepel, A. N. Tolopko, A. D. Farmer, P. A. Steadman, F. D. Schilkey, B. D. Perry, and W. D. Beavis The GeneMine system for genome/proteome annotation and collaborative 592 data mining C. Lee and K. Irizarry Number Three (G321-0142) Enhancing security and privacy in biometrics-based authentication 614 systems N. K. Ratha, J. H. Connell, and R. M. Bolle Securing e-business applications using smart cards 635 E.-M. Hamann, H. Henn, T. Schack, and F. Seliger The Internet public key infrastructure 648 M. Benantar Separation of duties for access control enforcement in workflow 666 environments R. A. Botha and J. H. P. Eloff Practical server privacy with secure coprocessors 683 S. W. Smith and D. Safford Security on z/OS: Comprehensive, current, and flexible 696 R. Guski, J. C. Dayka, L. N. Distel, W. B. Farrell, K. A. Gdaniec, M. J. Kelly, M. A. Nelson, L. H. Overby, and L. G. Robinson An architecture for the Internet Key Exchange Protocol 721 P.-C. Cheng A method for designing secure solutions 747 J. J. Whitmore Ethical hacking 769 C. C. Palmer Characteristics of production database workloads and the TPC 781 benchmarks W. W. Hsu, A. J. Smith, and H. C. Young Number Four (G321-0143) Knowledge management technology 814 A. D. Marwick Communities of practice and organizational performance 831 E. Lesser and J. Storck Evolving communities of practice: IBM Global Services experience 842 P. Gongla and C. R. Rizzuto The knowledge management puzzle: Human and social factors in 863 knowledge management J. C. Thomas, W. A. Kellogg, and T. Erickson Views of knowledge are human views 885 G. Dueck Linking e-business and operating processes: The role of knowledge 889 management L. Fahey, R. Srivastava, J. S. Sharon, and D. E. Smith Knowledge resource exchange in strategic alliances 908 S. Parise and J. C. Henderson Knowledge portals and the emerging digital knowledge workplace 925 R. Mack, Y. Ravin, and R. J. Byrd The Lotus Knowledge Discovery System: Tools and experiences 956 W. Pohs, G. Pinder, C. Dougherty, and M. White Text analysis and knowledge mining system 967 T. Nasukawa and T. Nagano Toward speech as a knowledge resource 985 E. W. Brown, S. Srinivasan, A. Coden, D. Ponceleon, J. W. Cooper, and A. Amir Where did knowledge management come from? 1002 L. Prusak Note-Numbers in parentheses after issue numbers denote the issue order numbers.