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IBM Journal of Research and Development

Systems Biology   Volume 50, Number 6, 2006
Table of contents: HTMLPDF This article: HTML PDFDOI: 10.1147/rd.506.0659Copyright info

Subject index for papers in Volume 50

Each index entry below is accompanied by an author's name and a page number; the author index contains the title of the paper and the names of coauthors, if any.

Subject Author Page
 
Algorithms
 An approximation to the greedy algorithm for differential compression Agarwal 149
 Braids and fibers: Language constructs with architectural support for adaptive responses to memory latencies Bacon 209
 Machine learning methods for transcription data integration Holloway 631
 Self-adapting numerical software (SANS) effort Dongarra 223
 
Arrays
 Design considerations for MRAM Maffitt 25
 
Biology and biomedical studies
 A spatially detailed myofilament model as a basis for large-scale biological simulations Hussan 583
 An assessment of the role of computing in systems biology Burbeck 529
 Computational multiscale modeling in the IUPS Physiome Project: Modeling cardiac electromechanics Nickerson 617
 Graph data management for molecular and cell biology Eckman 545
 Machine learning methods for transcription data integration Holloway 631
 Model-based design approaches in drug discovery: A parallel to traditional engineering approaches Schoeberl 645
 Multiscale biosystems integration: Coupling intracellular network analysis with tissue-patterning simulations Peirce 601
 The Pathway Editor: A tool for managing complex biological networks Sorokin 561
 Visualization of complementary systems biology data with parallel heatmaps Podowski 575
 
Biotechnology
 A spatially detailed myofilament model as a basis for large-scale biological simulations Hussan 583
 An assessment of the role of computing in systems biology Burbeck 529
 Computational multiscale modeling in the IUPS Physiome Project: Modeling cardiac electromechanics Nickerson 617
 Machine learning methods for transcription data integration Holloway 631
 Multiscale biosystems integration: Coupling intracellular network analysis with tissue-patterning simulations Peirce 601
 The Pathway Editor: A tool for managing complex biological networks Sorokin 561
 
Carrier transport
 Germanium channel MOSFETs: Opportunities and challenges Shang 377
 
Carrier transport in small structures
 Continuous MOSFET performance increase with device scaling: The role of strain and channel material innovations Antoniadis 363
 
Circuit and device technology
 High-performance CMOS variability in the 65-nm regime and beyond Bernstein 433
 Limited switch dynamic logic circuits for high-speed low-power circuit design Belluomini 277
 Optimizing CMOS technology for maximum performance Frank 419
 Silicon CMOS devices beyond scaling Haensch 339
 Three-dimensional integrated circuits Topol 491
 Ultralow-voltage, minimum-energy CMOS Hanson 469
 
CMOS
 Advanced high-κ dielectric stacks with polySi and metal gates: Recent progress and current challenges Gusev 387
 Emerging nanoscale silicon devices taking advantage of nanostructure physics Hiramoto 411
 High-performance CMOS variability in the 65-nm regime and beyond Bernstein 433
 Limited switch dynamic logic circuits for high-speed low-power circuit design Belluomini 277
 Optimizing CMOS technology for maximum performance Frank 419
 Product-representative “at speed” test structures for CMOS characterization Ketchen 451
 Silicon CMOS devices beyond scaling Haensch 339
 Ultralow-voltage, minimum-energy CMOS Hanson 469
 
Compilers and interpreters
 Systems research challenges: A scale-out perspective Agerwala 173
 
Computation
 An approximation to the greedy algorithm for differential compression Agarwal 149
 
Computational methods
 Machine learning methods for transcription data integration Holloway 631
 Self-adapting numerical software (SANS) effort Dongarra 223
 
Computer applications
 Building web services for scientific grid applications Kandaswamy 249
 
Computer architecture
 Application of full-system simulation in exploratory system design and development Peterson 321
 Decomposing the load–store queue by function for power reduction and scalability Baugh 287
 IBM Intelligent Bricks project—Petabytes and beyond Wilcke 181
 Reliability of modular mesh-connected intelligent storage brick systems Fleiner 199
 Systems research challenges: A scale-out perspective Agerwala 173
 
Computer organization and design
 Application of full-system simulation in exploratory system design and development Peterson 321
 Decomposing the load–store queue by function for power reduction and scalability Baugh 287
 IBM Intelligent Bricks project—Petabytes and beyond Wilcke 181
 Reliability of modular mesh-connected intelligent storage brick systems Fleiner 199
 Systems research challenges: A scale-out perspective Agerwala 173
 Victim management in a cache hierarchy Franaszek 507
 
Computer system availability
 IBM Intelligent Bricks project—Petabytes and beyond Wilcke 181
 Reliability of modular mesh-connected intelligent storage brick systems Fleiner 199
 
Computing, grid
 Building web services for scientific grid applications Kandaswamy 249
 
Cooling
 IBM Intelligent Bricks project—Petabytes and beyond Wilcke 181
 
Data, structures and accessing
 Graph data management for molecular and cell biology Eckman 545
 Visualization of complementary systems biology data with parallel heatmaps Podowski 575
 
Databases, relational
 Graph data management for molecular and cell biology Eckman 545
 
Device design
 Application of full-system simulation in exploratory system design and development Peterson 321
 Decomposing the load–store queue by function for power reduction and scalability Baugh 287
 Design considerations for MRAM Maffitt 25
 Development of the magnetic tunnel junction MRAM at IBM: From first junctions to a 16-Mb MRAM demonstrator chip Gallagher 5
 Modeling wire delay, area, power, and performance in a simulation infrastructure Carter 311
 Spintronics—A retrospective and perspective Wolf 101
 
Dielectrics
 Advanced high-κ dielectric stacks with polySi and metal gates: Recent progress and current challenges Gusev 387
 
Drug design
 Model-based design approaches in drug discovery: A parallel to traditional engineering approaches Schoeberl 645
 
Electroluminescence
 Highly efficient room-temperature tunnel spin injector using CoFe/MgO(001) Jiang 111
 
Error detection and correction
 HeapMon: A helper-thread approach to programmable, automatic, and low-overhead memory bug detection Shetty 261
 
Fault tolerance
 IBM Intelligent Bricks project—Petabytes and beyond Wilcke 181
 
Films, magnetic
 Two-level BEOL processing for rapid iteration in MRAM development Gaidis 41
 
Films, semiconductor
 Continuous MOSFET performance increase with device scaling: The role of strain and channel material innovations Antoniadis 363
 
Geonomic and proteomic analysis
 Model-based design approaches in drug discovery: A parallel to traditional engineering approaches Schoeberl 645
 Visualization of complementary systems biology data with parallel heatmaps Podowski 575
 
Graph theory
 Graph data management for molecular and cell biology Eckman 545
 
Graphics
 The Pathway Editor: A tool for managing complex biological networks Sorokin 561
 
Hall effect
 Toward dissipationless spin transport in semiconductors Bernevig 141
 
Insulators
 Advanced high-κ dielectric stacks with polySi and metal gates: Recent progress and current challenges Gusev 387
 
Integrated circuit design
 Optimizing CMOS technology for maximum performance Frank 419
 Ultralow-voltage, minimum-energy CMOS Hanson 469
 
Integrated circuits
 Three-dimensional integrated circuits Topol 491
 
Interconnection technology
 Two-level BEOL processing for rapid iteration in MRAM development Gaidis 41
 
Interfaces
 Continuous MOSFET performance increase with device scaling: The role of strain and channel material innovations Antoniadis 363
 The Pathway Editor: A tool for managing complex biological networks Sorokin 561
 
Junctions
 Rapid-turnaround characterization methods for MRAM development Abraham 55
 Single-domain model for toggle MRAM Worledge 69
 
Large-scale computing
 Decomposing the load–store queue by function for power reduction and scalability Baugh 287
 Limited switch dynamic logic circuits for high-speed low-power circuit design Belluomini 277
 
Logic design and technology
 Decomposing the load–store queue by function for power reduction and scalability Baugh 287
 Limited switch dynamic logic circuits for high-speed low-power circuit design Belluomini 277
 
Magnetic random access memory (MRAM)
 Design considerations for MRAM Maffitt 25
 Development of the magnetic tunnel junction MRAM at IBM: From first junctions to a 16-Mb MRAM demonstrator chip Gallagher 5
 Rapid-turnaround characterization methods for MRAM development Abraham 55
 Single-domain model for toggle MRAM Worledge 69
 Spin angular momentum transfer in current-perpendicular nanomagnetic junctions Sun 81
 Spintronics—A retrospective and perspective Wolf 101
 Two-level BEOL processing for rapid iteration in MRAM development Gaidis 41
 
Magnetics—studies and structures
 Bipolar spintronics: Fundamentals and applications Žutić 121
 Development of the magnetic tunnel junction MRAM at IBM: From first junctions to a 16-Mb MRAM demonstrator chip Gallagher 5
 Highly efficient room-temperature tunnel spin injector using CoFe/MgO(001) Jiang 111
 Rapid-turnaround characterization methods for MRAM development Abraham 55
 Single-domain model for toggle MRAM Worledge 69
 Spin angular momentum transfer in current-perpendicular nanomagnetic junctions Sun 81
 
Magnetoresistance
 Spintronics—A retrospective and perspective Wolf 101
 
Manufacturing
 Product-representative “at speed” test structures for CMOS characterization Ketchen 451
 
Mathematical functions and techniques
 Machine learning methods for transcription data integration Holloway 631
 
Memory (computer) design and technology
 Braids and fibers: Language constructs with architectural support for adaptive responses to memory latencies Bacon 209
 HeapMon: A helper-thread approach to programmable, automatic, and low-overhead memory bug detection Shetty 261
 Victim management in a cache hierarchy Franaszek 507
 
Memory (computer) management
 Braids and fibers: Language constructs with architectural support for adaptive responses to memory latencies Bacon 209
 Victim management in a cache hierarchy Franaszek 507
 
Memory, cache
 High-quality ISA synthesis for low-power cache designs in embedded microprocessors Cheng 299
 Victim management in a cache hierarchy Franaszek 507
 
Memory, random-access
 Development of the magnetic tunnel junction MRAM at IBM: From first junctions to a 16-Mb MRAM demonstrator chip Gallagher 5
 
Microprocessor systems and applications
 Application of full-system simulation in exploratory system design and development Peterson 321
 Decomposing the load–store queue by function for power reduction and scalability Baugh 287
 Modeling wire delay, area, power, and performance in a simulation infrastructure Carter 311
 
Models and modeling
 A spatially detailed myofilament model as a basis for large-scale biological simulations Hussan 583
 Application of full-system simulation in exploratory system design and development Peterson 321
 Computational multiscale modeling in the IUPS Physiome Project: Modeling cardiac electromechanics Nickerson 617
 Model-based design approaches in drug discovery: A parallel to traditional engineering approaches Schoeberl 645
 Modeling wire delay, area, power, and performance in a simulation infrastructure Carter 311
 Multiscale biosystems integration: Coupling intracellular network analysis with tissue-patterning simulations Peirce 601
 Single-domain model for toggle MRAM Worledge 69
 
Molecular structure modeling
 A spatially detailed myofilament model as a basis for large-scale biological simulations Hussan 583
 
Multimedia
 Three-dimensional integrated circuits Topol 491
 
Nanoscale structures and devices
 Emerging nanoscale silicon devices taking advantage of nanostructure physics Hiramoto 411
 Spin angular momentum transfer in current-perpendicular nanomagnetic junctions Sun 81
 
Numerical integration
 Self-adapting numerical software (SANS) effort Dongarra 223
 
Operating systems
 Systems research challenges: A scale-out perspective Agerwala 173
 
Parallel processing
 Systems research challenges: A scale-out perspective Agerwala 173
 
Performance analysis
 Optimizing CMOS technology for maximum performance Frank 419
 Performance and environment monitoring for continuous program optimization Caşcaval 239
 Product-representative “at speed” test structures for CMOS characterization Ketchen 451
 
Physics, solid state
 Bipolar spintronics: Fundamentals and applications Žutić 121
 Emerging nanoscale silicon devices taking advantage of nanostructure physics Hiramoto 411
 Silicon CMOS devices beyond scaling Haensch 339
 Toward dissipationless spin transport in semiconductors Bernevig 141
 
Power management
 High-performance CMOS variability in the 65-nm regime and beyond Bernstein 433
 High-quality ISA synthesis for low-power cache designs in embedded microprocessors Cheng 299
 Optimizing CMOS technology for maximum performance Frank 419
 Ultralow-voltage, minimum-energy CMOS Hanson 469
 
Process control and development
 Three-dimensional integrated circuits Topol 491
 
Programming systems
 High-quality ISA synthesis for low-power cache designs in embedded microprocessors Cheng 299
 Performance and environment monitoring for continuous program optimization Caşcaval 239
 
Semiconductor devices
 Silicon CMOS devices beyond scaling Haensch 339
 
Semiconductor technology
 Continuous MOSFET performance increase with device scaling: The role of strain and channel material innovations Antoniadis 363
 Optimizing CMOS technology for maximum performance Frank 419
 Ultralow-voltage, minimum-energy CMOS Hanson 469
 
Semiconductors
 Highly efficient room-temperature tunnel spin injector using CoFe/MgO(001) Jiang 111
 Toward dissipationless spin transport in semiconductors Bernevig 141
 
Silicon
 Optimizing CMOS technology for maximum performance Frank 419
 Ultralow-voltage, minimum-energy CMOS Hanson 469
 
Silicon–germanium
 Continuous MOSFET performance increase with device scaling: The role of strain and channel material innovations Antoniadis 363
 Germanium channel MOSFETs: Opportunities and challenges Shang 377
 
Silicon-on-insulator (SOI)
 Germanium channel MOSFETs: Opportunities and challenges Shang 377
 
Simulation
 A spatially detailed myofilament model as a basis for large-scale biological simulations Hussan 583
 An assessment of the role of computing in systems biology Burbeck 529
 Application of full-system simulation in exploratory system design and development Peterson 321
 Computational multiscale modeling in the IUPS Physiome Project: Modeling cardiac electromechanics Nickerson 617
 Modeling wire delay, area, power, and performance in a simulation infrastructure Carter 311
 Multiscale biosystems integration: Coupling intracellular network analysis with tissue-patterning simulations Peirce 601
 
Spintronics
 Bipolar spintronics: Fundamentals and applications Žutić 121
 Design considerations for MRAM Maffitt 25
 Development of the magnetic tunnel junction MRAM at IBM: From first junctions to a 16-Mb MRAM demonstrator chip Gallagher 5
 Highly efficient room-temperature tunnel spin injector using CoFe/MgO(001) Jiang 111
 Rapid-turnaround characterization methods for MRAM development Abraham 55
 Single-domain model for toggle MRAM Worledge 69
 Spin angular momentum transfer in current-perpendicular nanomagnetic junctions Sun 81
 Spintronics—A retrospective and perspective Wolf 101
 Toward dissipationless spin transport in semiconductors Bernevig 141
 Two-level BEOL processing for rapid iteration in MRAM development Gaidis 41
 
Testing
 HeapMon: A helper-thread approach to programmable, automatic, and low-overhead memory bug detection Shetty 261
 
Testing, chip
 Rapid-turnaround characterization methods for MRAM development Abraham 55
 Two-level BEOL processing for rapid iteration in MRAM development Gaidis 41
 
Testing, circuit
 Product-representative “at speed” test structures for CMOS characterization Ketchen 451
 
Transistors
 Optimizing CMOS technology for maximum performance Frank 419
 Ultralow-voltage, minimum-energy CMOS Hanson 469
 
Transistors, bipolar
 Bipolar spintronics: Fundamentals and applications Žutić 121
 
Web services
 Building web services for scientific grid applications Kandaswamy 249


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