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IBM Journal of Research and Development
Systems Biology   Volume 50, Number 6, 2006
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A spatially detailed myofilament model as a basis for large-scale biological simulations - References

 by J. Hussan,
P. P. de Tombe,
and J. J. Rice
References

  1. J. J. Rice and P. P. de Tombe, “Approaches to Modeling Crossbridges and Calcium-Dependent Activation in Cardiac Muscle,” Prog. Biophys. Mol. Biol. 85, No. 2–3, 179–195 (2004).
  2. J. R. Hussan, P. P. de Tombe, and J. J. Rice, “A Spatially-Detailed Model of Actin and Myosin Interaction in the Cardiac Myofilament Including Strain-Based Rates and Cooperative Mechanisms,” presented at the IASTED Conference on Biomedical Engineering, Innsbruck, Austria, February 15–17, 2006; see http://www.actapress.com/paperinfo.aspx?PaperID=23397.
  3. I. A. Telley, J. Denoth, E. Stussi, G. Pfitzer, and R. Stehle, “Half-Sarcomere Dynamics in Myofibrils During Activation and Relaxation Studied by Tracking Fluorescent Markers,” Biophys. J. 90, No. 2, 514–530 (2006).
  4. P. B. Chase, J. M. Macpherson, and T. L. Daniel, “A Spatially Explicit Nanomechanical Model of the Half-Sarcomere: Myofilament Compliance Affects Ca(2+)-Activation,” Ann. Biomed. Eng. 32, No. 11, 1559–1568 (2004).
  5. B. M. Wolska and D. M. Wieczorek, “The Role of Tropomyosin in the Regulation of Myocardial Contraction and Relaxation,” Pflugers Arch. 446, No. 1, 1–8 (2003).
  6. H. E. Huxley, “Electron Microscope Studies of the Organization of the Filaments in Striated Muscle,” Biochim. Biophys. Acta 12, 387–394 (1953).
  7. T. L. Daniel, A. C. Trimble, and P. B. Chase, “Compliant Realignment of Binding Sites in Muscle: Transient Behavior and Mechanical Tuning,” Biophys. J. 74, No. 4, 1611–1621 (1998).
  8. A. F. Huxley, “Muscle Structure and Theories of Contraction,” Prog. Biophys. Chem. 7, 255–318 (1957).
  9. E. Pate and R. Cooke, “A Model for the Interaction of Muscle Cross-Bridges with Ligands Which Compete with ATP,” J. Theor. Biol. 118, No. 2, 215–230 (1986).
  10. K. Guth and J. D. Potter, “Effect of Rigor and Cycling Cross-Bridges on the Structure of Troponin C and on the Ca2+ Affinity of the Ca2+-Specific Regulatory Sites in Skinned Rabbit Psoas Fibers,” J. Biol. Chem. 262, No. 28, 13627–13635 (1987).
  11. J. J. Rice, G. Stolovitzky, Y. Tu, and P. P. de Tombe, “Ising Model of Cardiac Thin Filament Activation with Nearest-Neighbor Cooperative Interactions,” Biophys. J. 84, No. 2, Pt. 1, 897–909 (2003).
  12. B. S. Pan, A. M. Gordon, and Z. X. Luo, “Removal of Tropomyosin Overlap Modifies Cooperative Binding of Myosin S-1 to Reconstituted Thin Filaments of Rabbit Striated Muscle,” J. Biol. Chem. 264, No. 15, 8495–8498 (1989).
  13. D. F. McKillop and M. A. Geeves, “Regulation of the Interaction Between Actin and Myosin Subfragment 1: Evidence for Three States of the Thin Filament,” Biophys. J. 65, No. 2, 693–701 (1993).
  14. K. M. Trybus and E. W. Taylor, “Kinetic Studies of the Cooperative Binding of Subfragment 1 to Regulated Actin,” Proc. Natl. Acad. Sci. USA 77, No. 12, 7209–7213 (1980).
  15. J. J. Rice, R. L. Winslow, and W. C. Hunter, “Comparison of Putative Cooperative Mechanisms in Cardiac Muscle: Length Dependence and Dynamic Responses,” Amer. J. Physiol. 276, No. 5, Pt. 2, H1734–H1754 (1999).
  16. P. H. Backx, W. D. Gao, M. D. Azan-Backx, and E. Marban, “The Relationship Between Contractile Force and Intracellular [Ca2+] in Intact Rat Cardiac Trabeculae,” J. Gen. Physiol. 105, No. 1, 1–19 (1995).
  17. S. A. Niederer, P. J. Hunter, and N. P. Smith, “A Quantitative Analysis of Cardiac Myocyte Relaxation: A Simulation Study,” Biophys. J. 90, No. 5, 1697–1722 (2006).
  18. P. M. Janssen, L. B. Stull, and E. Marban, “Myofilament Properties Comprise the Rate-Limiting Step for Cardiac Relaxation at Body Temperature in the Rat,” Amer. J. Physiol. Heart Circ. Physiol. 282, No. 2, H499–H507 (2002).
  19. J. C. Kentish, D. T. McCloskey, J. Layland, S. Palmer, J. M. Leiden, A. F. Martin, and R. J. Solaro, “Phosphorylation of Troponin I by Protein Kinase A Accelerates Relaxation and Crossbridge Cycle Kinetics in Mouse Ventricular Muscle,” Circ. Res. 88, No. 10, 1059–1065 (2001).
  20. P. M. Janssen and W. C. Hunter, “Force, Not Sarcomere Length, Correlates with Prolongation of Isosarcometric Contraction,” Amer. J. Physiol. 269, No. 2, Pt. 2, H676–H685 (1995).
  21. D. P. Dobesh, J. P. Konhilas, and P. P. de Tombe, “Cooperative Activation in Cardiac Muscle: Impact of Sarcomere Length,” Amer. J. Physiol. Heart Circ. Physiol. 282, No. 3, H1055–H1062 (2002).
  22. C. Tesi,  N. Piroddi,  F. Colomo,  and C. Poggesi,  “Relaxation Kinetics Following Sudden Ca(2+) Reduction in Single Myofibrils from Skeletal Muscle,” Biophys. J. 83, No. 4, 2142–2151 (2002).
  23. R. C. Wagner, Professor Emeritus of Biological Sciences, University of Delaware, Newark, DE 19716; see http://www.udel.edu/Biology/Wags/histopage/histopage.htm.


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