IBMSkip to main content
  Home     Products & services     Support & downloads     My account  
  Select a country 
Journals Home 
 Systems Journal 
Journal of Research
and Development
 ·  Current Issue 
 ·  Recent Issues 
 ·  Papers in Progress 
 ·  Search/Index 
 ·  Orders 
 ·  Description 
 ·  Patents 
 ·  Recent publications 
 ·  Author's Guide 
 Staff 
 Contact Us 
 Related links: 
    Deep Computing
   Institute
 
    IBM Servers
   Deep Computing
 
     NERSC  
     Berkeley Lab
   Computing Sciences
 
     SRM Middleware
   Project
 
     Bro Intrusion
   Detection System
 
     HPSS (IBM)  
     HPSS  
     SCxy Conferences  
     SCinet  
     Scientific Data
   Management
 
     LBNL's Network
   Research Group
 
IBM Journal of Research and Development 
Volume 48, Number 2, 2004
Deep Computing
 Table of contents: arrowHTML arrowPDF   This article: arrowHTML arrowPDF arrowCopyright info
  

Deep scientific computing requires deep data - References

by W. T. C. Kramer, A. Shoshani, D. A. Agarwal, B. R. Draney, G. Jin, G. F. Butler, and J. A. Hules

References

  1. “Towards Globus Toolkit 3.0: Open Grid Services Architecture,” http://www.globus.org/ogsa/.
  2. M. Alcubierre, B. Bruegmann, P. Diener, M. Koppitz, D. Pollney, E. Seidel, and R. Takahashi, “Gauge Conditions for Long-Term Numerical Black Hole Evolutions Without Excision,” Phys. Rev. D 67, 084023 (2003).
  3. “Lawrence Berkeley National Lab Leads International Team to Win High-Performance Computing Bandwidth Challenge,” http://www.lbl.gov/CS/Archive/othernews112502.html.
  4. J. Shalf and E. W. Bethel, “Cactus and Visapult: An Ultra-High Performance Grid-Distributed Visualization Architecture Using Connectionless Protocols,” IEEE Computer Graph. & Appl. 23, No. 2, 51–59 (2003).
  5. “NERSC Helps Climate Scientists Complete First Ever 1,000-Year Run of Nation's Leading Climate Change Modeling Application,” http://www.lbl.gov/CS/Archive/headlines090402.html.
  6. Community Climate System Model, http://www.ccsm.ucar.edu/.
  7. The Nearby Supernova Factory, http://snfactory.lbl.gov/.
  8. U.S. DOE Coupled Climate Model Data Archive, http://www.nersc.gov/projects/gcm_data/.
  9. “The Earth System Grid II: Turning Climate Model Datasets into Community Resources,” http://www.earthsystemgrid.org/.
  10. “Analysis of Fugu rubripes Genome Predicts Nearly 1,000 New Human Genes,” http://www.jgi.doe.gov/News/news_7_25_02.html.
  11. “Computational Analysis of Genomic Sequence Data,” http://www.nersc.gov/research/annrep01/sh_BER_06.html.
  12. “High Performance Networks for High Impact Science,” Report of the August 13–15, 2002 Workshop on Networking, conducted by the DOE Office of Science, http://doecollaboratory.pnl.gov/meetings/hpnpw/finalreport/high-impact_science.pdf.
  13. Fibre Channel Industry Association, http://www.fibrechannel.org/.
  14. “NERSC Strategic Proposal FY2002–FY2006,” http://old-www.nersc.gov/aboutnersc/pubs/Strategic_Proposal_final.pdf.
  15. High Performance Storage System (HPSS); see http://www4.clearlake.ibm.com/hpss/.
  16. IBM Tivoli® Storage Manager, http://www-3.ibm.com/software/tivoli/.
  17. Storage Archive Manager File System, http://www.sun.com/storage/software/data_mgmt/utilization/.
  18. VERITAS Software Corporation, http://www.veritas.com/.
  19. Cray Inc. Data Migration Facility, http://www.cray.com/.
  20. “Reference Model for Open Storage Systems Interconnection—Mass Storage System Reference Model Version 5,” developed by the IEEE Storage System Standards Working Group (Project 1244), Sept. 8, 1994, R. Garrison, Martin Marietta Corporation, Ed.; http://www.arl.mil/IEEE/ssswg.html.
  21. 3PARdata, Inc., 4209 Technology Drive, Fremont, CA 94538; Phone: (510) 413-5999, http://www.3pardata.com/.
  22. Panasas, Inc.; see http://www.panasas.com/.
  23. YottaYotta Inc., 6020 - 104 Street, Edmonton, Alberta, T6H 5S4; Phone: (780) 989-6800; http://www.yottayotta.com/.
  24. Julian Satran, Kalman Meth, Costa Sapuntzakis, Mallikarjun Chadalapaka, and Efri Zeidner, “iSCSI Internet Draft 19-January-03,” http://www.ietf.org/rfc/rfc3720.txt.
  25. InfiniBand Trade Association, http://www.infinibandta.org/home/.
  26. Gregory F. Butler, Rei Chi Lee, and Michael L. Welcome, “The Global Unified Parallel File System (GUPFS) Project: FY 2002 Activities and Results,” Lawrence Berkeley National Laboratory Technical Report LBNL-52456 (2003), http://old-www.nersc.gov/aboutnersc/pubs/GUPFS_02.pdf.
  27. Peter J. Braam and Rumi Zahir, “Lustre Technical Project Summary,” Version 2, July 29, 2001, Cluster File Systems, Inc., Mountain View, CA, http://www.lustre.org/docs/lustre-sow-dist.pdf.
  28. “General Parallel File System (GPFS) for AIX®,” http://www-1.ibm.com/servers/eserver/pseries/software/sp/gpfs.html.
  29. Lustre; see http://www.lustre.org/.
  30. Christos Karamanolis, Mallik Mahalingam, Dan Muntz, and Zheng Zhang, “DiFFS: A Scalable Distributed File System,” Hewlett-Packard Laboratories Technical Report HPL-2001-19 (2001), http://www.hpl.hp.com/techreports/2001/HPL-2001-19.pdf.
  31. Maximum Throughput InfinARRAY, http://www.max-t.com/html/products/infinarray.html.
  32. Ibrix, Inc., http://www.ibrix.com/.
  33. The Parallel Virtual File System (PVFS), http://www.parl.clemson.edu/pvfs/.
  34. Arie Shoshani, Alex Sim, and Junmin Gu, “Storage Resource Managers: Middleware Components for Grid Storage,” presented at the Nineteenth IEEE Symposium on Mass Storage Systems (MSS02), 2002, http://sdm.lbl.gov/~arie/papers/srm.mss02.pdf.
  35. Arie Shoshani, Alexander Sim, and Junmin Gu, “Storage Resource Managers: Essential Components for the Grid,” Grid Resource Management: State of the Art and Future Trends, J. Nabrzyski, J. M. Schopf, and J. Weglarz, Eds., Kluwer Academic Publishers, New York, 2003.
  36. Particle Physics Data Grid, http://www.ppdg.net/.
  37. Fermilab Mass Storage System, http://hppc.fnal.gov/enstore/.
  38. JASMine—Jefferson Lab Asynchronous Storage Manager, http://cc.jlab.org/scicomp/JASMine/.
  39. The CASTOR Project (CERN Advanced STORage Manager), http://castor.web.cern.ch/castor/.
  40. Myricom®, Inc., http://www.myri.com/.
  41. Quadrics, Ltd., http://www.quadrics.com/.
  42. G. Jin and B. Tierney, “System Capability Effects on Algorithms for Network Bandwidth Measurement,” Proceedings of the Internet Measurement Conference, Miami, October 27–29, 2003; Lawrence Berkeley National Laboratory Report LBNL-48556, http://dsd.lbl.gov/DIDC/papers/imc-2003.pdf.
  43. C. William McCurdy, Rick Stevens, Horst Simon, William Kramer, David Bailey, William Johnston, Charlie Catlett, Rusty Lusk, Thomas Morgan, Juan Meza, Michael Banda, James Leighton, and John Hules, “Creating Science-Driven Computer Architecture: A New Path to Scientific Leadership,” Lawrence Berkeley National Laboratory Report LBNL/PUB-5483 (2002), http://old-www.nersc.gov/news/ArchDevProposal.5.01.pdf.
  44. T. Dunigan, M. Mathis, and B. Tierney, “A TCP Tuning Daemon,” Proceedings of the IEEE/ACM SC2002 Conference, November 2002, http://www-didc.lbl.gov/papers/net100.sc02.final.pdf.
  45. S. Floyd, “High Speed TCP for Large Congestion Windows,” Internet draft, 2003, http://www.icir.org/floyd/papers/draft-floyd-tcp-highspeed-03.txt.
  46. B. Tierney, “TCP Tuning Guide,” http://www-didc.lbl.gov/TCP-tuning/TCP-tuning.html.
  47. C. Jin, D. Wei, S. H. Low, G. Buhrmaster, J. Bunn, D. H. Choe, R. L. A. Cottrell, J. C. Doyle, H. Newman, F. Paganini, S. Ravot, and S. Singh, “FAST Kernel: Background Theory and Experimental Results,” presented at the First International Workshop on Protocols for Fast Long-Distance Networks, February 3-4, 2003, CERN, Geneva, Switzerland, http://netlab.caltech.edu/pub/papers/pfldnet.pdf.
  48. V. Paxson, “Bro: A System for Detecting Network Intruders in Real-Time,” Computer Networks 31, 2435–2463 (1999).
  49. D. Gunter, B. Tierney, C. E. Tull, and V. Virmani, “On-Demand Grid Application Tuning and Debugging with the NetLogger Activation Service,” presented at the Fourth International Workshop on Grid Computing (Grid2003), Phonix, AZ, November 17, 2003.
  50. D. Agarwal, J. M. González, G. Jin, and B. Tierney, “An Infrastructure for Passive Network Monitoring of Application Data Streams,” presented at the 2003 Passive and Active Measurement Workshop, San Diego, April 2003.